The Ismailis are one of the largest Muslim minority populations of Central Asia, and they make up the second largest Shiʿi Muslim community globally. First emerging in the second half of the 8th century, the Ismaili missionary movement spread into many areas of the Islamic world in the 10th century, under the leadership of the Ismaili Fatimids caliphs in Egypt. The movement achieved astounding success in Central Asia in the 10th century, when many of the political and cultural elites of the region were converted. However, a series of repressions over the following century led to its almost complete disappearance from the metropolitan centers of Central Asia. The movement later re-emerged in the mountainous Badakhshan region of Central Asia (which encompasses the territories of present-day eastern Tajikistan and northeastern Afghanistan), where it was introduced by the renowned 11th-century Persian poet, philosopher, and Ismaili missionary Nasir-i Khusraw. Over the following centuries the Ismaili movement expanded among the populations of Badakhshan, reaching a population of over 200,000 in the 21st century. In the 19th and 20th centuries, the Ismailis suffered a series of severe repressions, first under local Sunni Muslim rulers and later under the antireligious policies of the Soviet Union. However, in the decades since the end of the Soviet period, the Ismailis of the region have become increasingly connected with the global Ismaili community and its leadership. While many aspects of the history of Ismailism in the Badakhshan region remain obscure and unexplored, the discoveries of significant corpuses of manuscripts in private collections since the 1990s in the Badakhshan region have opened up wide possibilities for future research.
The Khojas of Kashgar name a Sufi lineage, which became a ruling dynasty in eastern Turkestan or present-day Xinjiang in western China. Founded by the Samarkandi spiritual master Ahmad Kāsānī (d. 1542), a member of the Naqshbandiyya Sufi order strongly implicated in politics, the lineage divided into two competing branches, one led by Ishāq Khoja (d. 1599) and the other by Āfāq Khoja (d. 1694). Both leaders were influential at the court in Yarkand and engaged in frequent proselytizing missions among Turkic, Mongol, Tibetan, and Chinese populations. Yet, only Āfāq Khoja and his group of followers, the Āfāqiyya, with the support of Zunghar Mongols, created a kind of theocracy whose religious capital was Kashgar, and which was based on Sufi organization, practice, and ideology. Venerated as Sufi saints (īshān), the Khojas embodied a politico-religious form of Islamic sanctity (walāya) while promoting a doctrine of mystical renunciation. Paradoxically, although the regime did not survive internecine conflicts and the Qing conquest in 1759, the Khojas of Kashgar, including the Ishāqiyya sublineage, continued to be very active in the long run. They conducted insurrections throughout the Tarim basin and created short-lived enclaves until their complete neutralization in 1866 with the forced exile of the last great Khoja, Buzurg Khān Töre (d. 1869). In Xinjiang, the Khojas have remained venerated figures of the past until now, although collective memory kept a contradictory picture of them, oscillating between holy heroes and feudal oppressors. Descendants of the exiled Khojas in eastern Uzbekistan and southern Kazakhstan formed communities that still preserve relics and oral as well as written traditions.